# Bulk RNA-Seq and ATAC-Seq Integration Training

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**Agenda with start times:**

* Data set overview (00:01:14)
* Bulk RNA-Seq analysis pipeline (00:02:40)
* ATAC-Seq alignment (00:39:47)
* Filter alignment (00:42:30)
* Peak detection and chromosome view (00:46:10)
* Filter peaks (00:57:00)
* Peak annotation (01:00:20)
* Compare peak regions across samples (01:07:43)
* Compare peak regions across different samples (01:12:24)
* Motif detection (01:19:05)
* RNA-Seq and ATAC-Seq integration (01:22:25)