# Task Menu The Task Menu lists all the tasks that can be performed on a specific node. It can be invoked from either a **Data** or **Task node** and appears on the right hand side of the *Analyses* tab. It is *context-sensitive*, meaning that it will only present tasks that the user can perform on the selected node. For example, selecting an *Aligned reads* data node will not present aligners as options. Clicking a **Data node** presents a variety of tasks: * [Data summary report](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/data-summary-report) * [QA/QC](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc) * [Pre-alignment QA/QC](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/pre-alignment-qa-qc) * [ERCC Assessment](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/ercc-assessment) * [Post-alignment QA/QC](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/post-alignment-qa-qc) * [Coverage Report](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/coverage-report) * [Validate Variants](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/validate-variants) * [Feature distribution](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/feature-distribution) * [Single-cell QA/QC](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/single-cell-qa-qc) * [Cell barcode QA/QC](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/qa-qc/cell-barcode-qa-qc) * [Pre-alignment tools](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-alignment-tools) * [Trim bases](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-alignment-tools/trim-bases) * [Trim adapters](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-alignment-tools/trim-adapters) * [Filter reads](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-alignment-tools/filter-reads) * [Trim tags](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-alignment-tools/trim-tags) * [Post-alignment tools](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/post-alignment-tools) * [Filter alignments](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/post-alignment-tools/filter-alignments) * [Convert alignments to unaligned reads](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/post-alignment-tools/convert-alignments-to-unaligned-reads) * [Combine alignments](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/post-alignment-tools/combine-alignments) * [Deduplicate UMIs](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/post-alignment-tools/deduplicate-umis) * [Downscale alignments](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/post-alignment-tools/downscale-alignments) * [Annotation/Metadata](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/annotation-metadata) * [Annotate cells](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/annotation-metadata/annotate-cells) * [Annotation report](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/annotation-metadata/annotation-report) * [Publish cell attributes to project](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/annotation-metadata/publish-cell-attributes-to-project) * [Attribute report](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/annotation-metadata/attribute-report) * [Annotate Visium image](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/annotation-metadata/annotate-visium-image) * [Pre-analysis tools](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools) * [Generate group cell counts](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/generate-group-cell-counts) * [Pool cells](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/pool-cells) * [Split matrix](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/split-matrix) * [Hashtag demultiplexing](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/hashtag-demultiplexing) * [Merge matrices](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/merge-matrices) * [Descriptive statistics](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/descriptive-statistics) * [Spot clean](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/pre-analysis-tools/spot-clean) * [Aligners](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/aligners) * [Quantification](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification) * [Quantify to annotation model (Partek E/M)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/quantify-to-annotation-model-partek-em) * [Quantify to transcriptome (Cufflinks)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/quantify-to-transcriptome-cufflinks) * [Quantify to reference (Partek E/M)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/quantify-to-reference-partek-em) * [Quantify regions](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/quantify-regions) * [HTSeq](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/htseq) * [Count feature barcodes](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/count-feature-barcodes) * [Salmon](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/quantification/salmon) * [Filtering](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/filtering) * [Filter features](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/filtering/filter-features) * [Filter groups (samples or cells)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/filtering/filter-groups-samples-or-cells) * [Filter barcodes](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/filtering/filter-barcodes) * [Split by attribute](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/filtering/split-by-attribute) * [Downsample Cells](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/filtering/downsample-cells) * [Normalization and scaling](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling) * [Impute low expression](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/impute-low-expression) * [Impute missing values](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/impute-missing-values) * [Normalization](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/normalization) * [Normalize to baseline](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/normalize-to-baseline) * [Normalize to housekeeping genes](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/normalize-to-housekeeping-genes) * [Scran deconvolution](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/scran-deconvolution) * [SCTransform](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/sctransform) * [TF-IDF normalization](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/normalization-and-scaling/tf-idf-normalization) * [Batch removal](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/batch-removal) * [General linear model](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/batch-removal/general-linear-model) * [Harmony](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/batch-removal/harmony) * [Seurat3 integration](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/batch-removal/seurat3-integration) * [Differential Analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis) * [GSA](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/gsa) * [ANOVA/LIMMA-trend/LIMMA-voom](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/anova-limma-trend-limma-voom) * [Kruskal-Wallis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/kruskal-wallis) * [Detect alt-splicing (ANOVA)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/detect-alt-splicing-anova) * [DESeq2(R) vs DESeq2](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/deseq2-r-vs-deseq2) * [Hurdle model](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/hurdle-model) * [Compute biomarkers](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/compute-biomarkers) * [Transcript Expression Analysis - Cuffdiff](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/transcript-expression-analysis-cuffdiff) * [Troubleshooting](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/differential-analysis/troubleshooting) * [Survival Analysis with Cox regression and Kaplan-Meier analysis - Partek Flow](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/survival-analysis-with-cox-regression-and-kaplan-meier-analysis-partek-flow) * [Exploratory Analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis) * [Graph-based Clustering](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/graph-based-clustering) * [K-means Clustering](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/k-means-clustering) * [Compare Clusters](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/compare-clusters) * [PCA](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/pca) * [t-SNE](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/t-sne) * [UMAP](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/umap) * [Hierarchical Clustering](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/hierarchical-clustering) * [AUCell](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/aucell) * [Find multimodal neighbors](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/find-multimodal-neighbors) * [SVD](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/svd) * [CellPhoneDB](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/exploratory-analysis/cellphonedb) * [Trajectory Analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/trajectory-analysis) * [Trajectory Analysis (Monocle 2)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/trajectory-analysis/trajectory-analysis-monocle-2) * [Trajectory Analysis (Monocle 3)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/trajectory-analysis/trajectory-analysis-monocle-3) * [Variant Callers](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-callers) * [SAMtools](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-callers/samtools) * [FreeBayes](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-callers/freebayes) * [LoFreq](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-callers/lofreq) * [Variant Analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis) * [Fusion Gene Detection](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/fusion-gene-detection) * [Annotate Variants](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/annotate-variants) * [Annotate Variants (SnpEff)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/annotate-variants-snpeff) * [Annotate Variants (VEP)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/annotate-variants-vep) * [Filter Variants](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/filter-variants) * [Summarize Cohort Mutations](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/summarize-cohort-mutations) * [Combine Variants](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/variant-analysis/combine-variants) * [Copy Number Analysis (CNVkit)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/copy-number-analysis-cnvkit) * [Peak Callers (MACS2)](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/peak-callers-macs2) * [Peak analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/peak-analysis) * [Annotate Peaks](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/peak-analysis/annotate-peaks) * [Promoter sum matrix](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/peak-analysis/promoter-sum-matrix) * [Motif Detection](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/motif-detection) * [Metagenomics](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/metagenomics) * [Kraken](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/metagenomics/kraken) * [Alpha & beta diversity](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/metagenomics/alpha-and-beta-diversity) * [Choose taxonomic level](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/metagenomics/choose-taxonomic-level) * [10x Genomics](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/10x-genomics) * [Cell Ranger - Gene Expression](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/10x-genomics/cell-ranger-gene-expression) * [Cell Ranger - ATAC](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/10x-genomics/cell-ranger-atac) * [Space Ranger](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/10x-genomics/space-ranger) * [STARsolo](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/10x-genomics/starsolo) * [V(D)J Analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/vdj-analysis) * [Biological Interpretation](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/biological-interpretation) * [Gene Set Enrichment](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/biological-interpretation/gene-set-enrichment) * [GSEA](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/biological-interpretation/gsea) * [Correlation](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/correlation) * [Correlation analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/correlation/correlation-analysis) * [Sample Correlation](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/correlation/sample-correlation) * [Similarity matrix](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/correlation/similarity-matrix) * [Export](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/export) * [Classification](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/classification) * [Task actions](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/task-actions) * [Feature linkage analysis](https://help.partek.illumina.com/partek-flow/user-manual/task-menu/feature-linkage-analysis) Clicking a **Task node** gives you the option to view the *Task results* or perform *Task actions* such as rerunning the task (Figure 1).

Figure 1. Task menu invoked from a Task node

## Additional Assistance If you need additional assistance, please visit [our support page](http://www.partek.com/support) to submit a help ticket or find phone numbers for regional support.