> For the complete documentation index, see [llms.txt](https://help.partek.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.partek.illumina.com/partek-genomics-suite/tutorials/partek-pathway.md).

# Partek Pathway

Partek Pathway provides a visualization tool for pathway enrichment spreadsheets utilizing the KEGG database. This tutorial will illustrate:

* [Performing pathway enrichment](/partek-genomics-suite/tutorials/partek-pathway/performing-pathway-enrichment.md)
* [Analyzing pathway enrichment in Partek Genomics Suite](/partek-genomics-suite/tutorials/partek-pathway/analyzing-pathway-enrichment-in-partek-genomics-suite.md)
* [Analyzing pathway enrichment in Partek Pathway](/partek-genomics-suite/tutorials/partek-pathway/analyzing-pathway-enrichment-in-partek-pathway.md)

*Note: the workflow described below is enabled in Partek Genomics Suite version 7.0 software. Please fill out the form on* [*Our support page*](http://www.partek.com/support) *to request this version or use the **Help > Check for Updates** command to check whether you have the latest released version. The screenshots shown within this tutorial may vary across platforms and across different versions of Partek Genomics Suite.*

## Description of the Data Set

The pathway enrichment analysis illustrated in this user guide uses the [miRNA Expression and Integration with Gene Expression data set](http://s3.amazonaws.com/partekmedia/tutorials/miRNA_tutorial_data.zip). This data set is also used in our [miRNA data analysis tutorial](/partek-genomics-suite/tutorials/mirna-expression-and-integration-with-gene-expression.md).

Download and save the zipped project folder in an accessible location on your computer. The project folder for the tutorial will be created in the same location the zipped project folder is stored.

## Importing the Data Set

Import the project using the zipped project importer in Partek Genomics Suite.

* Select **File** from the main toolbar
* Select **Import**
* Select **Zipped Project...**
* Choose the zipped project folder, *miRNA\_tutorial\_data*

The project will open with three spreadsheets:

1\. Affy\_miR\_BrainHeart\_intensities,

2\. Affy\_HuGeneST\_BrainHeart\_GeneIntensities,

3\. ANOVAResults gene.

## Additional Assistance

If you need additional assistance, please visit [our support page](http://www.partek.com/support) to submit a help ticket or find phone numbers for regional support.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation by asking a question.

Perform an HTTP GET request on the following URL with the `ask` and `goal` query parameters:

```
GET https://help.partek.illumina.com/partek-genomics-suite/tutorials/partek-pathway.md?ask=<question>&goal=<user_goal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is what the user is ultimately trying to achieve, the reason they need the answer. Sharing it helps GitBook give you a better, more relevant answer. A goal is most helpful when it describes the outcome the user wants rather than restating the question. For example, with `ask=how do I create an API token`, a goal like `automate deployments from our CI pipeline` lets GitBook tailor the answer to that use case.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.