# User Manual

Partek Genomics Suite is a comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noise. Designed for high-dimensional genomic studies containing thousands of samples, Partek Genomics Suite is fast, memory efficient and will analyze large data sets on a personal computer. It supports a complete workflow including convenient data access tools, identification and annotation of important biomarkers, and construction and validation of predictive diagnostic classification systems.

* [Lists](https://help.partek.illumina.com/partek-genomics-suite/user-manual/lists)
* [Annotation](https://help.partek.illumina.com/partek-genomics-suite/user-manual/annotation)
* [Hierarchical Clustering Analysis](https://help.partek.illumina.com/partek-genomics-suite/user-manual/hierarchical-clustering-analysis)
* [Gene Ontology ANOVA](https://help.partek.illumina.com/partek-genomics-suite/user-manual/gene-ontology-anova)
* [Visualizations](https://help.partek.illumina.com/partek-genomics-suite/user-manual/visualizations)
* [Visualizing NGS Data](https://help.partek.illumina.com/partek-genomics-suite/user-manual/visualizing-ngs-data)
* [Chromosome View](https://help.partek.illumina.com/partek-genomics-suite/user-manual/chromosome-view)
* [Methylation Workflows](https://help.partek.illumina.com/partek-genomics-suite/user-manual/methylation-workflows)
* [Trio/Duo Analysis](https://help.partek.illumina.com/partek-genomics-suite/user-manual/trio-duo-analysis)
* [Association Analysis](https://help.partek.illumina.com/partek-genomics-suite/user-manual/association-analysis)
* [LOH detection with an allele ratio spreadsheet](https://help.partek.illumina.com/partek-genomics-suite/user-manual/loh-detection-with-an-allele-ratio-spreadsheet)
* [Import data from Agilent feature extraction software](https://help.partek.illumina.com/partek-genomics-suite/user-manual/import-data-from-agilent-feature-extraction-software)
* [Illumina GenomeStudio Plugin](https://help.partek.illumina.com/partek-genomics-suite/user-manual/illumina-genomestudio-plugin)

Additional information can be found in the manual for Partek Genomics Suite version 6.6.

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## Additional Assistance

If you need additional assistance, please visit [our support page](http://www.partek.com/support) to submit a help ticket or find phone numbers for regional support.