Release Notes
To install or upgrade to the latest version of Partek Flow software, follow the directions outlined in the Installation Guide.
12.2.0
Release date: October 10, 2024
Minor bug fixes
Latest docker image: registry.partek.com/rtw:12.2.0
12.1.0
Release date: September 6, 2024
Improved monocle 3 dialog by adding an option to set the number of nearest neighbors
Venn Diagram set-up allows user option to match gene identifiers in either case-sensitive or case-insensitive mode
Minor bug fixes
Latest docker image: registry.partek.com/rtw:12.1.0
12.0.1
Release date: July 12, 2024
Bug fix: Data import of h5 or sparse matrix data may be affected when cell or feature filtering is enabled. We suggest reimporting this data type if these data types were imported between June 24, 2024 and July 11, 2024.
Import of Alamar Bioscience proteomics data output in .csv format supported
Support for Visium HD, 8uM and 16uM
Latest docker image: registry.partek.com/rtw:12.0.1
12.0.0
A new look and feel with updated typography and icons, but the same functionality
Improved sparse matrix import for speed
Improved CosMx import for file compatibility
Updated default aligner settings to use the whole genome index as default
Additional sorting features added to the CellPhoneDB task
Minor bug fixes
Latest docker image: registry.partek.com/rtw:12.0.0
11.0.24.0604
Use multiple colors for a numeric variable to color the scatter plot
Added Normalization task option to use a numeric attribute to divide or subtract from data
Leiden algorithm option added to the graph-based clustering task
Added support to import Seurat 5 object
Added support to import Seurat object saved as .qs format
Added filter feature option in SVD task
Ability to specify multiple urls during fastq file import
Improved filter based on GSEA enrichment score dialog
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0529.62
11.0.24.0414
Added CellphoneDB task to analyze cell-cell communication process
Added display transcripts location ability on 10X Genomics Xenium data visualization
Improved trim adaptor task to be more memory efficient
Improved file browser when specify a location and click go button, it will scroll to the location on the left panel
Moved all tasks in Peak analysis section to Region analysis section
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0414.55
11.0.24.0325
Added more options for variant filter by fields
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0325.52
11.0.24.0317
Added hierarchical cluster analysis task to similarity matrix data node
Added statistical analysis task to cell descriptive stats
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0317.49
11.0.24.0311
Improved convert Seurat to matrix dialog to allow to configure meta data
Added more options in filter annotated peaks dialog
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0311.45
11.0.24.0226
Improved differential analysis report filter option on log2 ratio to allow user to specify a range to filter
Improved Normalize to housekeeping genes dialog to display both gene ID and gene name
Added data repository management on Settings page
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0301.39
11.0.24.0204
Added long reads aligner minimap2 and pbmm2
Simplified the Data Viewer configuration dialogs
Added Scree plot and component loadings table to the PCA report by default
Added Poisson regression and Negative binomial regression as options in the Differential analysis task
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0204.33
11.0.24.0102
Automatically generate spatial report on analysis tab after spatial data import
Added alt-splicing task option on Salmon's transcript count data node
Added STARsolo task for 10x Genomics scRNA-seq data
Updated FreeBayes to v1.3.6
PCA task default feature filter method is changed to variance from vst
Filter peaks task is moved to Filtering section from Peak analysis section on the menu
Make the enable/disable user account as separate privilege from add user account for admin
Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0102.29
11.0.23.1204
Enabled MACS peak detection report visualizations in the Data viewer
Improved the algorithm for the normalize to housekeeping genes task
Added more gene annotation options in SNV task report
Fixed the Venn diagram issue on some of the browsers
Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1204.23
11.0.23.1105
Added search function in Help menu to directly search the content in documentation page
Added option to choose a number of features to use in PCA computation
Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1105.16
11.0.23.1023
Improved differential analysis report layout
Add impute missing value task
Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1023.14
11.0.23.1009
Improved pre-alignment QC report
Fixed differential analysis report table download issue
Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1009.11
11.0.23.0918
The user interface now boasts a modern appearance
Enhanced the import wizard for greater intuitiveness and user-friendliness
Added support for SomaLogic ADAT bulk protein data
Improved the file browser for fast access to recent server uploads
Bolstered file protection to prevent accidental deletions when used by other projects
Added support for the 10x Genomics Xenium platform
Introduced support for the Nanostring CosMx platform
Added a new task for Correlation analysis between different assays
Improved scatterplot selection with a handy painting mode
Added the ability to display a high resolution Visium image with a new Spatial imaging report task for quick viewing
Added a manual alignment option for tissue image visualization
Streamlined the import process for multiple files per sample, e.g. import all 3 sparse matrix (feature-barcode-matrix) files per sample for all samples at one time
Added more available information on the Annotated region report
Improved the Seurat object conversion to be more intuitive
Added a more detailed report to the Adapter trimming task
Creating pseudobulk data by pooling single cells has been made easier with increased functionality
Optimized the differential analysis dialogs for improved usability
Changed the default normalization method for bulk RNA-Seq data to Median ratio (DESeq2)
Improved the Detect fusions and Trim bases tasks to be more intuitive
Allowed the Single-cell QA/QC task to be performed on individual samples
Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.0918.1
Archived Release Notes -- Partek Flow 10
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